VIRsiRNAdb

../../tmp/servers/virsirnadb/2028694172
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi2347	1	`tggtgatgatgtaattgct`	19
DQ201177.1	Human enterovirus 70 strain J670/71, complete genome	6904	`...................`	6922	100
X00595.1	Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab))	6963	`...................`	6981	100
V01148.1	Genome of human poliovirus type 1 (Mahoney strain). (One of two versi	6956	`...................`	6974	100
V01150.1	Human poliovirus strain Sabin 1 complete genome, strain Sabin 1	6964	`...................`	6982	100
D90457.1	CXA24CG Human coxsackievirus A24 DNA, complete genome	6987	`...................`	7005	100
D90457.1	CXA24CG Human coxsackievirus A24 DNA, complete genome	2664	`______...........__`	2674	57
D00625.1	POL2CG1 Human poliovirus 2 genomic RNA, complete genome	6957	`...................`	6975	100
M12197.1	POL2LAN Poliovirus type 2 (Lansing strain), complete genome	6963	`...................`	6981	100
AJ132960.1	Human poliovirus 1, complete genome. Isolated from faeces of immunode	6965	`...................`	6983	100
AJ132961.1	Human poliovirus 1, complete genome. Isolated from an immunodeficient	6965	`...................`	6983	100
AJ293918.1	Human poliovirus type 3 complete genome, live-attenuated strain USOL-	6960	`...................`	6978	100
AJ416942.1	Human poliovirus 1 genomic RNA for polyprotein, strain CHAT 10A-11	6964	`...................`	6982	100
AF462418.1	Human poliovirus 1 99/056-252-14, complete genome	6964	`...................`	6982	100
AF462419.1	Human poliovirus 1 RUS-1161-96-001, complete genome	6964	`...................`	6982	100
AJ430385.1	Human poliovirus 1 genomic RNA for polyprotein gene, strain Cox	6964	`...................`	6982	100
AF405669.1	Human poliovirus 1 isolate HAI00003, complete genome	6965	`...................`	6983	100
AF405682.1	Human poliovirus 1 isolate DOR00041C1, complete genome	6964	`...................`	6982	100
AY184219.1	Human poliovirus 1 strain Sabin 1, complete genome	6964	`...................`	6982	100
AY184220.1	Human poliovirus 2 strain Sabin 2, complete genome	6963	`...................`	6981	100
AY238473.1	Human poliovirus 2 strain MEF-1 polyprotein gene, complete cds	6963	`...................`	6981	100
AY177685.1	Human poliovirus 2, complete genome	6963	`...................`	6981	100
AY278549.1	Human poliovirus 2 isolate P2S/Mog65-3 (20120), complete genome	6963	`...................`	6981	100
AY278550.1	Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome	6963	`...................`	6981	100
AY278552.1	Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome	6963	`...................`	6981	100
AY278553.1	Human poliovirus 1 isolate P1W/Bar65 (19276), complete genome	6960	`...................`	6978	100
AF448782.1	Human poliovirus 2 strain EGY88-074, complete genome	6963	`...................`	6981	100
AF448783.1	Human poliovirus 2 strain EGY93-034, complete genome	6965	`...................`	6983	100
AF499636.1	Human coxsackievirus A11 strain Belgium-1, complete genome	6977	`...................`	6995	100
AF499636.1	Human coxsackievirus A11 strain Belgium-1, complete genome	4011	`...........________`	4001	57
AF499637.1	Human coxsackievirus A13 strain Flores, complete genome	6982	`...................`	7000	100
AF499638.1	Human coxsackievirus A15 strain G9, complete genome	6965	`...................`	6983	100
AF499642.1	Human coxsackievirus A20 strain IH35, complete genome	6960	`...................`	6978	100
AF465511.1	Human coxsackievirus A13 strain Flores, complete genome	6982	`...................`	7000	100
AF465512.1	Human coxsackievirus A15 strain G-9, complete genome	6965	`...................`	6983	100
AF465514.1	Human coxsackievirus A20 strain IH Pool 35, complete genome	6960	`...................`	6978	100
AF538840.1	Human poliovirus 1 isolate TCDCE01-135, complete genome	6934	`...................`	6952	100
AF538841.1	Human poliovirus 1 isolate TCDC01-113, complete genome	6964	`...................`	6982	100
AF538842.1	Human poliovirus 1 isolate TCDC01-330, complete genome	6956	`...................`	6974	100
AF538843.1	Human poliovirus 1 isolate TCDC01-861, complete genome	6956	`...................`	6974	100
AF111961.2	Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome	6968	`...................`	6986	100
AF111966.2	Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome	6968	`...................`	6986	100
AF111981.2	Human poliovirus 1 isolate CHN-Fujian/93-8, complete genome	6968	`...................`	6986	100
AJ544513.1	Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050	6963	`...................`	6981	100
AF111984.2	Human poliovirus 1 isolate CHN-Jiangxi/89-1, complete genome	6967	`...................`	6985	100
AY876912.1	Human enterovirus Ningbo3-02, complete genome	6982	`...................`	7000	100
AY876912.1	Human enterovirus Ningbo3-02, complete genome	2659	`______...........__`	2669	57
AY876913.1	Human enterovirus Hangzhou13-02, complete genome	6982	`...................`	7000	100
AY876913.1	Human enterovirus Hangzhou13-02, complete genome	2659	`______...........__`	2669	57
AY928383.1	Human poliovirus 1 isolate d261-2002037607 polyprotein gene, complete	6956	`...................`	6974	100
AY928384.1	Human poliovirus 1 isolate d224-2002037606 polyprotein gene, complete	6956	`...................`	6974	100
AY928385.1	Human poliovirus 1 isolate d054-2002037604 polyprotein gene, complete	6956	`...................`	6974	100
AY928386.1	Human poliovirus 1 isolate d179-2002037605 polyprotein gene, complete	6956	`...................`	6974	100
AY928387.1	Human poliovirus 1 isolate d018-2002037602 polyprotein gene, complete	6956	`...................`	6974	100
AM040035.1	Human poliovirus 2 complete virion genome, isolate PV2/4568-1/ISR98	6867	`...................`	6885	100
AM040036.1	Human poliovirus 2 complete virion genome, isolate PV2/5021-1/ISR99	6867	`...................`	6885	100
AM040037.1	Human poliovirus 2 complete virion genome, isolate PV2/5074-18/ISR99	6867	`...................`	6885	100
AM040038.1	Human poliovirus 2 complete virion genome, isolate PV2/5104-1/ISR99	6867	`...................`	6885	100
AM040039.1	Human poliovirus 2 complete virion genome, isolate PV2/5116-9/ISR99	6867	`...................`	6885	100
AB205395.1	Human enterovirus C genomic RNA, complete genome, strain: Cambodia-02	6955	`...................`	6973	100
DQ205099.1	Human poliovirus 2 clone S2R9, complete genome	6963	`...................`	6981	100
DQ358078.1	Human coxsackievirus A20 serotype CAV20a, complete genome	6968	`...................`	6986	100
DQ358078.1	Human coxsackievirus A20 serotype CAV20a, complete genome	3550	`_______..........._`	3560	57
DQ443001.1	Human coxsackievirus A24 isolate DSO-52/2005, complete genome	6987	`...................`	7005	100
DQ443002.1	Human coxsackievirus A24 isolate DSO-26/2005, complete genome	6987	`...................`	7005	100
AM084223.1	Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,	6963	`...................`	6981	100
DQ890385.1	Human poliovirus 2 strain NIE0210766, complete genome	6963	`...................`	6981	100
DQ890386.1	Human poliovirus 2 strain NIE0110767, complete genome	6965	`...................`	6983	100
DQ890387.1	Human poliovirus 2 strain USA9810768, complete genome	6963	`...................`	6981	100
EF026081.1	Human coxsackievirus A24 strain Joseph, complete genome	6982	`...................`	7000	100
EF456707.1	Human poliovirus 3 isolate K/2002 polyprotein gene, complete cds	6915	`...................`	6933	100
EF555644.1	Human enterovirus 99, complete genome	6970	`...................`	6988	100
EF555645.1	Human enterovirus 102, complete genome	6961	`...................`	6979	100
AM884184.1	Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD005	6963	`...................`	6981	100
AM884185.1	Human poliovirus 2, complete genome, genomic RNA, isolate VDPV MAD006	6963	`...................`	6981	100
EU794953.1	Human poliovirus 1 isolate A21 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794954.1	Human poliovirus 1 isolate A49 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794955.1	Human poliovirus 1 isolate A63 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794956.1	Human poliovirus 1 isolate A84 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794957.1	Human poliovirus 1 isolate A88 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794958.1	Human poliovirus 1 isolate A91 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794959.1	Human poliovirus 1 isolate A102 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794960.1	Human poliovirus 1 isolate A105 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794961.1	Human poliovirus 1 isolate A118 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794962.1	Human poliovirus 1 isolate A199 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794963.1	Human poliovirus 1 isolate A449 polyprotein gene, complete cds	6916	`...................`	6934	100
EU794964.1	Human poliovirus 1 isolate A649 polyprotein gene, complete cds	6916	`...................`	6934	100
FM955278.1	Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA17	6981	`...................`	6999	100
FJ769378.1	Human poliovirus 1 strain CHN8184/GZ/CHN/2004, complete genome	6964	`...................`	6982	100
FJ769379.1	Human poliovirus 1 strain CHN8229-1/GZ/CHN/2004, complete genome	6964	`...................`	6982	100
FJ769380.1	Human poliovirus 1 strain CHN8229-2/GZ/CHN/2004, complete genome	6964	`...................`	6982	100
FJ769381.1	Human poliovirus 1 strain CHN8229-3/GZ/CHN/2004, complete genome	6964	`...................`	6982	100
FJ769382.1	Human poliovirus 1 strain CHN8233c/GZ/CHN/2004, complete genome	6964	`...................`	6982	100
FJ769383.1	Human poliovirus 1 strain CHN8225c/GZ/CHN/2004, complete genome	6964	`...................`	6982	100
FJ769384.1	Human poliovirus 1 strain CHN8248c/GZ/CHN/2004, complete genome	6964	`...................`	6982	100
FJ769385.1	Human poliovirus 1 strain CHN8264c/GZ/CHN/2004, complete genome	6964	`...................`	6982	100
FJ898290.1	Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl	6963	`...................`	6981	100
FJ914252.2	Human poliovirus 3 strain SWI10947, complete genome	6959	`...................`	6977	100
HM107835.1	Human poliovirus 2 isolate CHN8316, complete genome	6963	`...................`	6981	100
EF107097.1	Human enterovirus 94 isolate 19/04 from Democratic Republic of the Co	6846	`.................._`	6863	94
X04468.1	Poliovirus type 3 strain 23127 complete genome	6959	`.................._`	6976	94
AF499640.1	Human coxsackievirus A18 strain G13, complete genome	6981	`.................._`	6998	94
AF465513.1	Human coxsackievirus A18 strain G-13, complete genome	6981	`.................._`	6998	94
EF456706.1	Human poliovirus 1 isolate 7/b/97 nonfunctional polyprotein gene, com	6917	`.................._`	6934	94
X79047.1	Echovirus type 12, prototype Travis wild type genome	6915	`.................._`	6932	94
X77708.1	Echovirus type 12, prototype Travis complete RNA genome	6915	`.................._`	6932	94
AY302543.1	Human echovirus 17 strain CHHE-29 complete genome	6908	`.................._`	6925	94
AY302543.1	Human echovirus 17 strain CHHE-29 complete genome	4393	`________...........`	4383	57
AY302544.1	Human echovirus 19 strain Burke complete genome	6925	`.................._`	6942	94
AY302544.1	Human echovirus 19 strain Burke complete genome	4410	`________...........`	4400	57
AY302549.1	Human echovirus 25 strain JV-4 complete genome	6918	`.................._`	6935	94
AY302549.1	Human echovirus 25 strain JV-4 complete genome	4403	`________...........`	4393	57
AY302554.1	Human echovirus 31 strain Caldwell complete genome	6924	`.................._`	6941	94
AY302555.1	Human echovirus 32 strain PR-10 complete genome	6912	`.................._`	6929	94
AY302555.1	Human echovirus 32 strain PR-10 complete genome	4397	`________...........`	4387	57
AY302556.1	Human echovirus 33 strain Toluca-3 complete genome	6886	`.................._`	6903	94
HM031191.1	Human echovirus 25 strain HN-2, complete genome	6920	`.................._`	6937	94
AF405690.1	Human poliovirus 1 isolate DOR00013, complete genome	6964	`.........c.........`	6982	94
AY278551.1	Human poliovirus 2 isolate P2S/Mog66-4 (21043), complete genome	6963	`.........c.........`	6981	94
AF458333.1	Human poliovirus 1 isolate HAI01015, complete genome	6964	`.........c.........`	6982	94
AF111982.2	Human poliovirus 1 isolate CHN-Yunnan/92, complete genome	6968	`...............a...`	6986	94
AF111983.3	Human poliovirus 1 isolate CHN-Henan/91-3, complete genome	6968	`...c...............`	6986	94
AY560657.1	Human poliovirus 1 strain Brunhilde, complete genome	6968	`...............c...`	6986	94
AB180070.1	Human poliovirus 1 gene for polyprotein, complete cds, isolate:Mindan	6964	`...............a...`	6982	94
AB180071.1	Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon-	6964	`...............a...`	6982	94
AB180072.1	Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon-	6964	`...............a...`	6982	94
AB180073.1	Human poliovirus 1 gene for polyprotein, complete cds, isolate:Luzon-	6964	`...............a...`	6982	94
AY948201.1	Human poliovirus 2 isolate CHN1025 polyprotein gene, complete cds	6964	`...............a...`	6982	94
AB205396.1	Human coxsackievirus A18 genomic RNA, complete genome, strain: CAM197	6984	`............g......`	7002	94
AM084224.1	Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,	6963	`............g......`	6981	94
AM084225.1	Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,	6963	`............g......`	6981	94
DQ890388.1	Human poliovirus 2 strain PER8310769, complete genome	6963	`......c............`	6981	94
AY673831.1	Human coxsackievirus B3 strain GA, complete genome	6893	`............g......`	6911	94
AY673831.1	Human coxsackievirus B3 strain GA, complete genome	3729	`____...........g.__`	3741	63
AY875692.1	Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome	6895	`............g......`	6913	94
AY302548.1	Human echovirus 24 strain DeCamp complete genome	6926	`_................._`	6942	89
AY302560.1	Enterovirus 69 strain Toluca-1 complete genome	6904	`_................._`	6920	89
DQ916376.1	Human enterovirus 94 isolate E210, complete genome	6879	`............g....._`	6896	89
AF405666.1	Human poliovirus 1 isolate HAI01007, complete genome	6964	`.........c........_`	6981	89
AF111953.2	Human poliovirus 1 isolate CHN-Hebei/91-2, complete genome	6968	`............g....._`	6985	89
EF682343.1	Human poliovirus 1 strain USA10774 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682344.1	Human poliovirus 1 strain USA10775 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682345.1	Human poliovirus 1 strain USA10773 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682346.1	Human poliovirus 1 strain USA10780 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682347.1	Human poliovirus 1 strain USA10781 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682348.1	Human poliovirus 1 strain USA10782 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682349.1	Human poliovirus 1 strain USA10771 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682350.1	Human poliovirus 1 strain USA10772 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682351.1	Human poliovirus 1 strain USA10778 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682352.1	Human poliovirus 1 strain USA10770 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682353.1	Human poliovirus 1 strain USA10777 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682354.1	Human poliovirus 1 strain USA10779 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682355.1	Human poliovirus 1 strain USA10776 polyprotein gene, complete cds	6938	`............g....._`	6955	89
EF682356.1	Human poliovirus 1 strain USA10784, complete genome	6964	`............g....._`	6981	89
EF682357.1	Human poliovirus 1 strain USA10785, complete genome	6964	`............g....._`	6981	89
EF682358.1	Human poliovirus 1 strain USA10783, complete genome	6964	`............g....._`	6981	89
EF682359.1	Human poliovirus 1 strain USA10786, complete genome	6964	`............g....._`	6981	89
X05690.1	Coxsackievirus B4 complete genome	6887	`............g....._`	6904	89
X05690.1	Coxsackievirus B4 complete genome	4372	`________...........`	4362	57
AF039205.1	Coxsackievirus B6 strain Schmitt, complete genome	6890	`............g....._`	6907	89
AF039205.1	Coxsackievirus B6 strain Schmitt, complete genome	5270	`____..........a..a.`	5256	68
AF083069.1	Echovirus 5, complete genome	6925	`............g....._`	6942	89
AF105342.1	Coxsackievirus B6 strain Schmitt, complete genome	6890	`............g....._`	6907	89
AF105342.1	Coxsackievirus B6 strain Schmitt, complete genome	5270	`____..........a..a.`	5256	68
AF114384.1	Coxsackievirus B6 strain Schmitt, complete genome	6889	`............g....._`	6906	89
AF114384.1	Coxsackievirus B6 strain Schmitt, complete genome	5269	`____..........a..a.`	5255	68
AF465518.1	Human echovirus 2 strain Cornelis, complete genome	6927	`...............c.._`	6944	89
AY302540.1	Human echovirus 14 strain Tow complete genome	6942	`......c..........._`	6959	89
AY302545.1	Human echovirus 2 strain Cornelis complete genome	6927	`...............c.._`	6944	89
AY302552.1	Human echovirus 29 strain JV-10 complete genome	6919	`...a.............._`	6936	89
AY302552.1	Human echovirus 29 strain JV-10 complete genome	4404	`________...........`	4394	57
AY556070.1	Enterovirus 75 strain USA/OK85-10362, complete genome	6921	`............t....._`	6938	89
AY896762.1	Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein	6872	`............t....._`	6889	89
AY843305.1	Human enterovirus 87 strain BAN01-10396, complete genome	6914	`............c....._`	6931	89
DQ246620.1	Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome	6920	`............g....._`	6937	89
DQ246620.1	Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome	4405	`________...........`	4395	57
DQ480420.1	Human coxsackievirus B4 strain Tuscany, complete genome	6887	`............g....._`	6904	89
DQ480420.1	Human coxsackievirus B4 strain Tuscany, complete genome	4372	`________...........`	4362	57
EF174469.1	Human coxsackievirus B2 isolate KOR 04-279, complete genome	6898	`............g....._`	6915	89
EF174469.1	Human coxsackievirus B2 isolate KOR 04-279, complete genome	4383	`________...........`	4373	57
EU144042.1	Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c	6892	`............c....._`	6909	89
EU144042.1	Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c	4377	`________...........`	4367	57
AB501332.1	Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)-	6902	`............t....._`	6919	89
HM185055.1	Human echovirus 6 strain Echo6/Henan/116/2008, complete genome	6911	`............g....._`	6928	89
HM185055.1	Human echovirus 6 strain Echo6/Henan/116/2008, complete genome	4000	`_..........._______`	3990	57
HM185056.1	Human enterovirus B strain EVB/Henan/127/2008, complete genome	6888	`............g....._`	6905	89
HM185056.1	Human enterovirus B strain EVB/Henan/127/2008, complete genome	3977	`_..........._______`	3967	57
U16283.1	E6U16283 Echovirus 6 lytic strain, complete genome	6909	`............g..c...`	6927	89
U16283.1	E6U16283 Echovirus 6 lytic strain, complete genome	3999	`...a.........______`	3987	63
AF465517.1	Human echovirus 6 strain Charles, complete genome	6910	`............g..c...`	6928	89
AF465517.1	Human echovirus 6 strain Charles, complete genome	4000	`...a.........______`	3988	63
AY302558.1	Human echovirus 6 strain D'Amori complete genome	6910	`............g..c...`	6928	89
AY302558.1	Human echovirus 6 strain D'Amori complete genome	4000	`...a.........______`	3988	63
S76772.1	polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive	6889	`_...........c....._`	6905	84
S76772.1	polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive	4373	`________...........`	4363	57
AF311939.1	Human coxsackievirus B4 strain E2 variant, complete genome	6889	`_...........c....._`	6905	84
AF311939.1	Human coxsackievirus B4 strain E2 variant, complete genome	4373	`________...........`	4363	57
AY556057.1	Enterovirus 74 strain USA/CA75-10213, complete genome	6902	`_...........t....._`	6918	84
AY843303.1	Human enterovirus 85 strain BAN00-10353, complete genome	6914	`_...........t....._`	6930	84
AY843307.1	Human enterovirus 97 strain BAN99-10355, complete genome	6905	`_...........c....._`	6921	84
AY843307.1	Human enterovirus 97 strain BAN99-10355, complete genome	4389	`________...........`	4379	57
M33854.1	CXA3CG Coxsackievirus B3 (CVB3) complete genome	6891	`............g..c.._`	6908	84
M33854.1	CXA3CG Coxsackievirus B3 (CVB3) complete genome	4376	`________...........`	4366	57
M16572.1	CXA3G Coxsackievirus B3, complete genome	6890	`............g..c.._`	6907	84
M16572.1	CXA3G Coxsackievirus B3, complete genome	4375	`________...........`	4365	57
M88483.1	CXAB3CG Coxsackievirus B3 mRNA, complete genome	6892	`............g..c.._`	6909	84
M88483.1	CXAB3CG Coxsackievirus B3 mRNA, complete genome	4377	`________...........`	4367	57
AF162711.1	Echovirus 30 strain Bastianni, complete genome	6927	`.........c..t....._`	6944	84
AF162711.1	Echovirus 30 strain Bastianni, complete genome	4412	`________...........`	4402	57
AF231763.1	Coxsackievirus B3 strain 31-1-93, complete genome	6892	`............g..c.._`	6909	84
AF231763.1	Coxsackievirus B3 strain 31-1-93, complete genome	4377	`________...........`	4367	57
AF231764.1	Coxsackievirus B3 strain P, complete genome	6892	`............g..c.._`	6909	84
AF231764.1	Coxsackievirus B3 strain P, complete genome	4377	`________...........`	4367	57
AF231765.1	Coxsackievirus B3 strain PD, complete genome	6892	`............g..c.._`	6909	84
AF231765.1	Coxsackievirus B3 strain PD, complete genome	4377	`________...........`	4367	57
AF241359.1	Enterovirus CA55-1988, complete genome	6903	`...c...........c.._`	6920	84
AF241359.1	Enterovirus CA55-1988, complete genome	4388	`________...........`	4378	57
AY036578.1	Human echovirus 7 strain UMMC polyprotein gene, complete cds	6918	`............g..a.._`	6935	84
AF311938.1	Human echovirus 30 strain Bastianni, complete genome	6932	`.........c..t....._`	6949	84
AF311938.1	Human echovirus 30 strain Bastianni, complete genome	4417	`________...........`	4407	57
AY186745.1	Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds	6863	`............g..c.._`	6880	84
AY186745.1	Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds	4348	`________...........`	4338	57
AY186746.1	Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds	6863	`............g..c.._`	6880	84
AY186746.1	Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds	4348	`________...........`	4338	57
AY186747.1	Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds	6863	`............g..c.._`	6880	84
AY186747.1	Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds	4348	`________...........`	4338	57
AY186748.1	Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds	6863	`............g..c.._`	6880	84
AY186748.1	Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds	4348	`________...........`	4338	57
AY302546.1	Human echovirus 20 strain JV-1 complete genome	6886	`............g..c.._`	6903	84
AY302550.1	Human echovirus 26 strain Coronel complete genome	6915	`............g..a.._`	6932	84
AY302551.1	Human echovirus 27 strain Bacon complete genome	6903	`............g..a.._`	6920	84
AY302553.1	Human echovirus 3 strain Morrisey complete genome	6920	`............g..c.._`	6937	84
AY752945.1	Human coxsackievirus B3 strain 0, complete genome	6892	`............g..c.._`	6909	84
AY752945.1	Human coxsackievirus B3 strain 0, complete genome	4377	`________...........`	4367	57
AY752946.1	Human coxsackievirus B3 strain 20, complete genome	6892	`............g..c.._`	6909	84
AY752946.1	Human coxsackievirus B3 strain 20, complete genome	4377	`________...........`	4367	57
AY896765.1	Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g	6895	`............c..a.._`	6912	84
AY896765.1	Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g	4380	`________...........`	4370	57
AY843297.1	Human enterovirus 79 strain USA/CA79-10384, complete genome	6922	`.........c..t....._`	6939	84
AY843301.1	Human enterovirus 83 strain USA/CA76-10392, complete genome	6886	`............t..c.._`	6903	84
AY843304.1	Human enterovirus 86 strain BAN00-10354, complete genome	6892	`.........c..c....._`	6909	84
AY843304.1	Human enterovirus 86 strain BAN00-10354, complete genome	6830	`..a.........tg...a.`	6812	78
AY843304.1	Human enterovirus 86 strain BAN00-10354, complete genome	4377	`________...........`	4367	57
EF174468.1	Human coxsackievirus B2 isolate KOR 04-243, complete genome	6898	`............g..c.._`	6915	84
EF371880.2	Human enterovirus B isolate SE-03-78616, complete genome	6897	`_..g..c............`	6914	84
EF371880.2	Human enterovirus B isolate SE-03-78616, complete genome	3348	`___....tc........._`	3334	68
FJ000001.1	Human coxsackievirus B3 strain Fuyang19, complete genome	6891	`...a..c..........._`	6908	84
FJ000001.1	Human coxsackievirus B3 strain Fuyang19, complete genome	3980	`_..........._______`	3970	57
FJ000001.1	Human coxsackievirus B3 strain Fuyang19, complete genome	4376	`________...........`	4366	57
AB501329.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	6902	`.........c..t....._`	6919	84
AY752944.2	Human coxsackievirus B3 strain 28, complete genome	6892	`............g..c.._`	6909	84
AY752944.2	Human coxsackievirus B3 strain 28, complete genome	4377	`________...........`	4367	57
AF546702.1	Human coxsackievirus A21 strain Kuykendall, complete genome	6929	`.........c..g..a...`	6947	84
AF465515.1	Human coxsackievirus A21 strain Kuykendall, complete genome	6929	`.........c..g..a...`	6947	84
DQ534205.1	Human echovirus 30 isolate 14916net87, complete genome	6859	`..a.........t....a.`	6841	84
DQ534205.1	Human echovirus 30 isolate 14916net87, complete genome	4406	`________...........`	4396	57
EF063152.1	Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd	6918	`...g.........t.g...`	6936	84
EU262658.1	Human coxsackievirus A16 strain shzh05-1, complete genome	6919	`...a.........t.a...`	6937	84
FJ198212.1	Human coxsackievirus A16 strain GZ08, complete genome	6919	`...g.........t.a...`	6937	84
AB575915.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944	6866	`...g.........c.a...`	6884	84
AF524867.1	Human echovirus 9 isolate DM, complete genome	6947	`_...........g..a.._`	6963	78
AB426611.1	Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227	6905	`_...........c..c.._`	6921	78
AJ276224.1	Human echovirus 11 genomic RNA for polyprotein	6922	`.........c..c..c.._`	6939	78
EU147493.1	Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds	6885	`.........c..g..c.._`	6902	78
AY421760.1	Human coxsackievirus A2 strain Fleetwood, complete genome	6908	`_..a.........c.g...`	6925	78
AY421765.1	Human coxsackievirus A7 strain Parker, complete genome	6914	`_..a.........t.a...`	6931	78
AY421767.1	Human coxsackievirus A10 strain Kowalik, complete genome	6919	`_..a.........c.g...`	6936	78
EF667343.1	Simian enterovirus 46 strain RNM5, complete genome	6886	`............gc.a.._`	6903	78
EF667344.1	Human enterovirus 92 strain RJG7, complete genome	6870	`............gc.a.._`	6887	78
AF326764.2	Simian enterovirus 46 strain OM22 (P15), complete genome	6901	`............cc.a.._`	6918	78
FJ172159.1	Human enterovirus 71 isolate NUH0075/SIN/08, complete genome	6880	`_..g.........t.g...`	6897	78
AB575941.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248	6858	`_..g.........t.g...`	6875	78
AB575942.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369	6853	`_..g.........t.g...`	6870	78
AF085363.1	Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds	6836	`..a.........t...___`	6821	73
AF085363.1	Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds	4383	`________...........`	4373	57
AF081485.1	Coxsackievirus B2 strain Ohio, complete genome	6836	`..a.........t...___`	6821	73
AF081485.1	Coxsackievirus B2 strain Ohio, complete genome	4383	`________...........`	4373	57
AF316321.2	Enterovirus 5865/sin/000009, complete genome	6855	`___.........t....a.`	6840	73
AF352027.1	Enterovirus 5666/sin/002209, complete genome	6855	`___.........t....a.`	6840	73
FJ606450.1	Human enterovirus 71 strain BJ08-Z025-5, complete genome	6854	`..a.........t...___`	6839	73
FJ607337.1	Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co	6853	`..a.........t...___`	6838	73
U22522.1	ETU22522 Human enterovirus 71 polyprotein gene, complete cds	6858	`..a.........tg...a.`	6840	78
FJ607334.1	Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g	725	`_...c.a.........___`	711	68
FJ607335.1	Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g	725	`_...c.a.........___`	711	68
GQ279370.1	Human enterovirus 71 strain SZ/HK08-6, complete genome	726	`_...c.a.........___`	712	68
AY036579.1	Human echovirus 7 strain Wallace polyprotein gene, complete cds	6854	`___.........t...___`	6842	63
AF465516.1	Human echovirus 7 strain Wallace, complete genome	6854	`___.........t...___`	6842	63
AY302559.1	Human echovirus 7 strain Wallace complete genome	6854	`___.........t...___`	6842	63
AY697458.1	Human enterovirus 76 polyprotein gene, complete cds	1971	`..........t..______`	1959	63
X54521.1	Swine vesicular disease virus complete genomic RNA	4377	`________...........`	4367	57
D00627.1	CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G	4426	`________...........`	4416	57
D16364.1	SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd	4378	`________...........`	4368	57
X80059.1	Echo Virus 11 genomic DNA	4416	`________...........`	4406	57
X84981.1	Echovirus 9 (strain Hill), complete genome	4398	`________...........`	4388	57
D00435.1	SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl	4378	`________...........`	4368	57
AF114383.1	Coxsackievirus B5 strain Faulkner, complete genome	4377	`________...........`	4367	57
AF268065.1	Swine vesicular disease virus strain NET/1/92, complete genome	4378	`________...........`	4368	57
AY302542.1	Human echovirus 16 strain Harrington complete genome	4410	`________...........`	4400	57
AY302547.1	Human echovirus 21 strain Farina complete genome	4403	`________...........`	4393	57
AY429470.1	Swine vesicular disease virus strain HK'70, complete genome	4378	`________...........`	4368	57
AJ577594.1	Human echovirus 11, isolate ROU-9191, complete virion genome	4409	`________...........`	4399	57
AY843300.1	Human enterovirus 82 strain USA/CA64-10390, complete genome	4410	`________...........`	4400	57
AY843302.1	Human enterovirus 77 strain USA/TX97-10394, complete genome	4399	`________...........`	4389	57
AY843306.1	Human enterovirus 88 strain BAN01-10398, complete genome	4409	`________...........`	4399	57
AY843308.1	Human enterovirus 101 strain CIV03-10361, complete genome	4422	`________...........`	4412	57
AJ849942.1	Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/	4404	`________...........`	4394	57
EU887278.1	Swine vesicular disease virus SVDV01, complete genome	4378	`________...........`	4368	57
EU887279.1	Swine vesicular disease virus SVDV02, complete genome	4378	`________...........`	4368	57
EU887280.1	Swine vesicular disease virus SVDV03, complete genome	4378	`________...........`	4368	57
EU887281.1	Swine vesicular disease virus SVDV04, complete genome	4378	`________...........`	4368	57
EU887282.1	Swine vesicular disease virus SVDV, complete genome	4378	`________...........`	4368	57
GQ141875.1	Human coxsackievirus B3 strain Beijing0811, complete genome	4378	`________...........`	4368	57

VIRsiRNAdb

Database of Viral siRNA / shRNA